HIV Virus Research
Human Immunodeficiency Virus (HIV) | Virion Structure and Genome Organization | eEnzyme
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About Human Immunodeficiency Virus
Human immunodeficiency virus (HIV) is an enveloped retrovirus in the genus Lentivirus, subfamily Orthoretrovirinae, and family Retroviridae. HIV infects cells that express CD4, particularly CD4-positive T lymphocytes, and uses the chemokine receptors CCR5 or CXCR4 as major entry coreceptors. Progressive loss and dysfunction of CD4 T cells can lead to acquired immunodeficiency syndrome (AIDS) if infection is not effectively treated.
Two major human immunodeficiency viruses are recognized: HIV-1 and HIV-2. HIV-1 is responsible for the large majority of infections worldwide and is divided into several phylogenetic groups, including groups M, N, O, and P. Group M contains the principal subtypes and circulating recombinant forms. HIV-2 is genetically related to simian immunodeficiency viruses of sooty mangabeys and is concentrated mainly in West Africa, although infections occur in other regions.
Mature HIV-1 particles are approximately 100–120 nm in diameter and contain a host-derived lipid envelope bearing trimeric Env spikes. Each spike is composed of surface glycoprotein gp120 and transmembrane glycoprotein gp41. Beneath the envelope lies the matrix protein MA (p17), while the characteristic conical core is formed mainly by capsid protein CA (p24).
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HIV-1 virion structure and genome organization.
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The mature capsid encloses two copies of the positive-sense single-stranded RNA genome, nucleocapsid proteins, and essential viral enzymes, including reverse transcriptase, integrase, and protease. Following entry and uncoating, reverse transcriptase converts the viral RNA genome into double-stranded DNA. Integrase then inserts this DNA into a host chromosome, producing a provirus that serves as the template for viral RNA and protein synthesis.
HIV gene expression depends on extensive alternative splicing and the regulatory proteins Tat and Rev. Newly synthesized genomic RNA and viral proteins assemble at the plasma membrane, where immature particles bud from the cell. Viral protease subsequently cleaves Gag and Gag-Pol polyproteins, reorganizing the particle into the mature infectious virion.
Combination antiretroviral therapy suppresses HIV replication by targeting multiple stages of the viral life cycle, including entry, reverse transcription, integration, proteolytic maturation, and capsid function. HIV proteins and genetic variants remain central to studies of viral entry, neutralizing antibodies, immune escape, drug resistance, latency, vaccine development, and reservoir biology.
Genome Organization & Encoded Proteins
The HIV-1 RNA genome is approximately 9.3 kb per RNA copy. After reverse transcription and integration, the provirus is flanked by 5′ and 3′ long terminal repeats (LTRs). The principal coding regions include the structural genes gag, pro, pol, and env; the regulatory genes tat and rev; and the accessory genes vif, vpr, vpu, and nef. HIV-2 encodes Vpx rather than Vpu.
5′ LTR — gag — pro — pol — vif — vpr — tat / rev — vpu — env — nef — 3′ LTR
Gag is processed into the principal structural proteins MA, CA, NC, and p6. The Gag-Pol polyprotein is produced through ribosomal frameshifting and provides protease, reverse transcriptase, RNase H, and integrase. Env is synthesized as gp160 and cleaved by a cellular protease into gp120 and gp41. Regulatory and accessory proteins control transcription, RNA export, particle release, immune evasion, and resistance to host restriction factors.
| Protein |
Principal Function |
| MA (p17) — Matrix |
Lines the inner viral membrane, directs Gag to the plasma membrane, and contributes to particle assembly and Env incorporation. |
| CA (p24) — Capsid |
Forms the mature conical capsid and regulates uncoating, intracellular trafficking, nuclear entry, reverse transcription, and innate immune sensing. |
| NC (p7) — Nucleocapsid |
Binds and packages the viral RNA genome and acts as a nucleic-acid chaperone during reverse transcription and assembly. |
| p6 |
Recruits host ESCRT machinery to support membrane scission and virion budding. |
| Protease (PR) |
Cleaves Gag and Gag-Pol polyproteins into mature proteins and drives structural maturation of newly released particles. |
| Reverse Transcriptase (RT) |
Converts viral RNA into DNA and includes DNA polymerase and RNase H functions required for formation of the double-stranded viral DNA intermediate. |
| Integrase (IN) |
Processes viral DNA ends and catalyzes insertion of viral DNA into the host-cell genome. |
| gp120 (SU) |
Surface glycoprotein that binds CD4 and the CCR5 or CXCR4 coreceptor and is a major target of neutralizing antibodies. |
| gp41 (TM) |
Transmembrane glycoprotein that anchors Env in the viral membrane and mediates fusion between viral and cellular membranes. |
| Tat |
Transcriptional activator that binds the TAR RNA element and promotes efficient elongation of viral transcripts. |
| Rev |
Binds the Rev response element and promotes nuclear export of incompletely spliced and unspliced viral RNAs. |
| Vif |
Counteracts APOBEC3 restriction factors by recruiting a cellular ubiquitin-ligase complex that promotes their degradation. |
| Vpr |
Packaged into virions and contributes to infection of nondividing cells, modulation of DNA-damage responses, and G2/M cell-cycle arrest. |
| Vpu — HIV-1 |
Promotes virion release by antagonizing tetherin/BST2 and contributes to degradation or downregulation of selected host proteins, including CD4. |
| Vpx — HIV-2 |
Counteracts the SAMHD1 restriction factor and supports efficient infection of macrophages and dendritic cells. |
| Nef |
Modifies host-cell trafficking and signaling, downregulates CD4 and selected MHC class I molecules, and enhances viral replication and immune evasion. |
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Scientific Resources & Further Reading
The following trusted organizations and databases provide current information on HIV taxonomy, genome organization, life cycle, viral sequences, treatment, resistance, and protein structures.
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